gvimdiff /ptmp/joemci/waccm04_cam3_5_07/models/atm/cam/src/chemistry/waccm_mozart/chemistry.F90 /ptmp/joemci/waccm_stacy_cam3_1_9_brnchT_waccm_12/models/atm/cam/src/chemistry/waccm_mozart/chemistry.F90
Changes in same locations - some variables added to this module

gvimdiff /ptmp/joemci/waccm04_cam3_5_07/models/atm/cam/src/physics/cam/diffusion_solver.F90 /ptmp/joemci/waccm_stacy_cam3_1_9_brnchT_waccm_12/models/atm/cam/src/physics/cam1/diffusion_solver.F90
Changes appear to be in same or nearly same locations - double precision added to variables/calculations

*gvimdiff /ptmp/joemci/waccm04_cam3_5_07/models/atm/cam/src/dynamics/fv/dp_coupling.F90 /ptmp/joemci/waccm_stacy_cam3_1_9_brnchT_waccm_12/models/atm/cam/src/dynamics/fv/dp_coupling.F90
Changes in same locations but loop variables changed, added variables, more structures

gvimdiff /ptmp/joemci/waccm04_cam3_5_07/models/atm/cam/src/physics/cam/geopotential.F90  /ptmp/joemci/waccm_stacy_cam3_1_9_brnchT_waccm_12/models/atm/cam/src/physics/cam1/geopotential.F90
Changes in same locations - double precision added to variables/calculations

gvimdiff /ptmp/joemci/waccm04_cam3_5_07/models/atm/cam/src/physics/waccm/gw_drag.F90  /ptmp/joemci/waccm_stacy_cam3_1_9_brnchT_waccm_12/models/atm/cam/src/physics/waccm/gw_drag.F90
Changes in same locations except maybe ktop_gw - double precision and some variables added to this module
 
*'inti.F90' missing
Moved to physpkg.F90 as subroutine physics_init

*gvimdiff /ptmp/joemci/waccm04_cam3_5_07/models/atm/cam/src/chemistry/waccm_mozart/iondrag.F90  /ptmp/joemci/waccm_stacy_cam3_1_9_brnchT_waccm_12/models/atm/cam/src/chemistry/waccm_mozart/iondrag.F90
Changes in same locations - double precision added to variables/calculations and some variables gone
 
gvimdiff /ptmp/joemci/waccm04_cam3_5_07/models/atm/cam/src/chemistry/waccm_mozart/mo_mean_mass.F90  /ptmp/joemci/waccm_stacy_cam3_1_9_brnchT_waccm_12/models/atm/cam/src/chemistry/waccm_mozart/mo_mean_mass.F90
Changes in same locations - no differences 

*gvimdiff /ptmp/joemci/waccm04_cam3_5_07/models/atm/cam/src/chemistry/waccm_mozart/mo_tgcm_ubc.F90  /ptmp/joemci/waccm_stacy_cam3_1_9_brnchT_waccm_12/models/atm/cam/src/chemistry/waccm_mozart/mo_tgcm_ubc.F90
Changes in same locations - double precision added to variables/calculations and loop variable change

*gvimdiff /ptmp/joemci/waccm04_cam3_5_07/models/atm/cam/src/chemistry/waccm_mozart/mo_waccm_hrates.F90  /ptmp/joemci/waccm_stacy_cam3_1_9_brnchT_waccm_12/models/atm/cam/src/chemistry/waccm_mozart/mo_waccm_hrates.F90
Changes in same locations - double precision added to variables/calculations and loop variable change

gvimdiff /ptmp/joemci/waccm04_cam3_5_07/models/atm/cam/src/physics/cam/molec_diff.F90  /ptmp/joemci/waccm_stacy_cam3_1_9_brnchT_waccm_12/models/atm/cam/src/physics/cam1/molec_diff.F90
Changes in same locations - double precision added to variables/calculations 

gvimdiff /ptmp/joemci/waccm04_cam3_5_07/models/atm/cam/src/physics/waccm/nlte_lw.F90  /ptmp/joemci/waccm_stacy_cam3_1_9_brnchT_waccm_12/models/atm/cam/src/physics/waccm/nlte_lw.F90
Changes in same locations - double precision added to variables/calculations 

gvimdiff /ptmp/joemci/waccm04_cam3_5_07/models/atm/cam/src/dynamics/fv/par_xsum.F90  /ptmp/joemci/waccm_stacy_cam3_1_9_brnchT_waccm_12/models/atm/cam/src/dynamics/fv/par_xsum.F90
Change in same location - bug fixed

*'phys_adiabatic.F90' is missing 
Moved to physpkg.F90 as subroutine phys_run1_adiabatic_or_ideal

*'phys_idealized.F90' is missing
Moved to physpkg.F90 as subroutine phys_run1_adiabatic_or_ideal

gvimdiff /ptmp/joemci/waccm04_cam3_5_07/models/atm/cam/src/physics/cam/physics_types.F90  /ptmp/joemci/waccm_stacy_cam3_1_9_brnchT_waccm_12/models/atm/cam/src/physics/cam1/physics_types.F90
Changes in same locations but loop variables changed - double precision added to variables/calculations,
routine added, variables added

*'prognostics.F90' missing
Moved to dyn_comp.F90 in subroutine dyn_create_interface?

gvimdiff /ptmp/joemci/waccm04_cam3_5_07/models/atm/cam/src/physics/waccm/radheat.F90  /ptmp/joemci/waccm_stacy_cam3_1_9_brnchT_waccm_12/models/atm/cam/src/physics/waccm/radheat.F90
Changes in same locations - double precision added to variables/calculations 
 
*gvimdiff /ptmp/joemci/waccm04_cam3_5_07/models/atm/cam/src/dynamics/fv/stepon.F90  /ptmp/joemci/waccm_stacy_cam3_1_9_brnchT_waccm_12/models/atm/cam/src/dynamics/fv/stepon.F90
Changes are simple but need to be placed in correct location in updated code - many differences 

*gvimdiff /ptmp/joemci/waccm04_cam3_5_07/models/atm/cam/src/dynamics/fv/te_map.F90  /ptmp/joemci/waccm_stacy_cam3_1_9_brnchT_waccm_12/models/atm/cam/src/dynamics/fv/te_map.F90
Change is simple but needs to be placed in correct location in updated code - double precision added to 
variables/calculations, structure added, more constants declared, code added 

gvimdiff /ptmp/joemci/waccm04_cam3_5_07/models/atm/cam/src/physics/cam/tphysac.F90 /ptmp/joemci/waccm_stacy_cam3_1_9_brnchT_waccm_12/models/atm/cam/src/physics/cam1/tphysac.F90
Changes in same locations but code has subroutine interface differences - new structure added

gvimdiff /ptmp/joemci/waccm04_cam3_5_07/models/atm/cam/src/chemistry/waccm_mozart/upper_bc.F90  /ptmp/joemci/waccm_stacy_cam3_1_9_brnchT_waccm_12/models/atm/cam/src/chemistry/waccm_mozart/upper_bc.F90
Changes in same locations - code uses a couple addtional constants
 
*gvimdiff /ptmp/joemci/waccm04_cam3_5_07/models/atm/cam/src/physics/cam/vertical_diffusion.F90  /ptmp/joemci/waccm_stacy_cam3_1_9_brnchT_waccm_12/models/atm/cam/src/physics/cam1/vertical_diffusion.F90
Change in same location but changes near location - use of additional constants/routines and significant 
code additions