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To run the iop plots, run function "plot.loop()". It reads from dataset("field-30sec") and creates 9 graphics windows.
There is also a script "iop_plots.sh" which should run R and create those plots. There should be a shortcut icon on the desktop called "Rplots" which should run that script.
Updating our R packages
My intention is to put our packages on http://www.eol.ucar.edu/software/R
, but currently the web server does not allow downloads from that location. In the meantime, the packages are at http://www.eol.ucar.edu/isf/projects/METCRAXII/isfs/R. I've made a script "update_R" in the project script directory which will fetch and install the packages on Linux.