Child pages
  • Troubleshooting
Skip to end of metadata
Go to start of metadata

This page lists some common problems that users can have in trying to run CAM-chem.

(1) Build error - case name

ERROR: No default value found for case_name.

There are several reasons this may occur:

  • Check if you included “--mach cheyenne” option when you created the new case.
  • Make sure your $CASENAME does not have a slash ("/") at the end of the full path.

(2) Build error - freezing

The build will hang on the command:

...calling cam buildcpp to set build time option

Cancel the build and try the command


and if the same freeze occurs then the problem is most likely within the namelist definition file (user_nl_cam). Make sure all the commas and quote marks are there. Sometimes, if the user_nl_cam file has been opened in Notepad or another text editor, auto-formatting can change the formatting of some symbols, such as quote marks (e.g. Word automatically changes straight quote marks to curly quote marks).

(3) Build error - coupling definition

During the model build the following error occurs:

 Calling /gpfs/fs1/work/fvitt/cesm/cesm2.1-exp003_O3S/components/mosart//cime_config/buildnml
Invalid values ['10800.0']
ERROR: Variable 'coupling_period' has invalid value ['10800.0'].

This occurs when using Python 3 rather than Python 2. Module load python2.7.X and clean build.

(4) Submit error - files missing

Cloning and creating a branch is complete but the following error occurs:

ERROR: Could not find all inputdata on any server

a) Check your restart files have been copied to the output run folder, and that they are the same date as the RUN_REFDATE

b) Make sure initialization files are not defined in the user_nl_cam or user_nl_clm files (i.e. remove those lines if they are there).

(5) Run error - model crash due to MPT error

With a recent update to the MPT system on cheyenne during March 2019, the env_mach_specific.xml file needs to be updated. Otherwise you will be able to submit, but will find the simulation crashes with this error in the cesm.log.XXX file:

MPT ERROR: invalid option -p
        (HPE MPT 2.19  12/07/18 05:32:16

To correct the error copy the file:


to your case directory, then reset and recompile.

>./case.setup --reset
>./ --clean

(6) Run error - model crash due to dry deposition

(seq_drydep_read) Read in drydep_inparm namelist from: drv_flds_in
 ERROR: (seq_drydep_read) ERROR: encountered end-of-file on namelist read

This error occurs when you add a gas species and make it to be dry deposited by adding the species name into ‘drydep_list’ in ‘&drydep_inparm’, but you don’t modify seq_drydep_mod.F90. See instructions on

(7) Run error - model crash past 2016

To run past 2016 you will need to make sure the correct sea ice specification is called. Edit in env_run.xml:

<entry id="SSTICE_DATA_FILENAME" value="/gpfs/fs1/work/tilmes/inputdata/sst/">
<entry id="SSTICE_YEAR_END" value="2018">

and of course ensure all your emissions and meteorology files cover the dates you require.

To use the latest 0.9 x 1.25 SSTICE file, edit env_run.xml:

<entry id="SSTICE_DATA_FILENAME" value="/glade/work/tilmes/inputdata/sst/">
<entry id="SSTICE_YEAR_END" value="2020">

Which repeats 2018 SSTs for 2019 and 2020.

(8) Run error - model crash due to rpointer.drv file check

(seq_infodata_Init) read rpointer file rpointer.drv
(seq_infodata_Init) restart file from rpointer= str_undefined
(seq_io_read_openfile) ERROR: file invalid str_undefined
ERROR: Unknown error submitted to shr_abort_abort.

This error occurs when your env_run.xml file has CONTINUE_RUN="TRUE" with RUN_TYPE="startup" or "hybrid" accidentally.

To correct it, change CONTINUE_RUN variable to "FALSE" 

  • No labels