stepon.F:

  • Used prognostics, which is eliminated in 3.5.07, and now use dyn_comp.
  • dynpkg, which is eliminated in 3.5.07, replaced now by dyn_run.
  • d_p_coupling
    • geopotential
  • physpkg
  • p_d_coupling

physpkg.F:
calls physics initialization routines

  • phys_init
    • gw_inti
    • verticaL_diffusion_init
  • phys_run1
    • tphysbc
  • phys_run2
    • tphysac: which calls major and minor diffusion routines.
      • vertical_diffusion: uses routines in diffusion_solver, which calls compute_molec_diff. Have to figure out how to modify eddy_diff.
      • mspd_intr

chemistry.F90: change the ubc.
physics_types.F90: calls physics_update, geopotential.

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